Outputs
########
   
All In One output:   
   
+-----------------------------------------------+--------------------------------------------+
| content                                       | filename                                   | 
+===============================================+============================================+
| All data nneeded to biuild a 3D model         | \*/output/\*.loop3d                        | 
+-----------------------------------------------+--------------------------------------------+
   
Topology outputs:   
   
+-----------------------------------------------+--------------------------------------------+
| content                                       | filename                                   | 
+===============================================+============================================+
| Combined fault and strat relationships        | \*/output/\*.gml                           | 
+-----------------------------------------------+--------------------------------------------+
| Various stratigraphic topology graphs         | \*/graph/\*.gml                            | 
+-----------------------------------------------+--------------------------------------------+
| Group-level stratigraphic relationships       | \*/tmp/groups.csv                          | 
+-----------------------------------------------+--------------------------------------------+
| Formation-level stratigraphic relationships   | \*/tmp/\*_groups.csv                       | 
+-----------------------------------------------+--------------------------------------------+
| Summary strat relationships                   | \*/tmp/all_sorts.csv or all_sorts_clean.csv| 
+-----------------------------------------------+--------------------------------------------+
| Fault-fault relationship table                | \*/output/fault-fault-relationships.csv    | 
+-----------------------------------------------+--------------------------------------------+
| Fault-fault relationship graph                | \*/output/fault_network.gml                |
+-----------------------------------------------+--------------------------------------------+
| Fault-unit relationship table                 | \*/output/unit-fault-relationships.csv     |
+-----------------------------------------------+--------------------------------------------+
| Fault-group relationship table                | \*/output/group-fault-relationships.csv    |
+-----------------------------------------------+--------------------------------------------+

Digital Terrain Model:

+-----------------------+----------------------+
| content               | filename             |
+=======================+======================+
| dtm in lat long wgs84 | \*/dtm/dtm.tif       |
+-----------------------+----------------------+
| georeferenced dtm     | \*/dtm/dtm_rp.tif    |
+-----------------------+----------------------+

Geometry:

+-----------------------------------------------+---------------------------------------------------------------------------------+
| content                                       | filename                                                                        |
+===============================================+=================================================================================+
| Contact info with z and formation             | \*/output/contacts4.csv or contacts_clean.csv                                   |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Contact info with tangent info                | \*/tmp/raw_contacts.csv                                                         |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Fault trace with z                            | \*/output/faults.csv                                                            |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Basal contacts shapefile                      | \*/tmp/basal_contacts.shp                                                       |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Clipped geology map shapefile                 | \*/tmp/geol_clip.shp                                                            |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Clipped fault shapefile                       | \*/tmp/faults_clip.shp   &    \*/tmp/faults_clip_data.shp                       |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Clipped  fold axial traces shapefile          | \*/tmp/folds_clip.shp                                                           |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Pluton contacts with z and formation          | \*/output/ign_contacts.csv                                                      |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Local formation thickness estimates           | \*/output/formation_thicknesses_norm.csv and formation_summary_thickness.csv    |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Fault dimensions                              | \*/output/fault_dimensions.csv                                                  |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Fault displacements                           | \*/output/fault_displacement3.csv                                               |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Fault strat & thickness-based displacements   | \*/output/fault_strat_offset3.csv                                               |
+-----------------------------------------------+---------------------------------------------------------------------------------+
| Near-Fault strat contacts                     | \*/output/fault_tip_contacts\*.csv                                              |
+-----------------------------------------------+---------------------------------------------------------------------------------+

Orientations:

+------------------------------------------+-----------------------------------------------------+
| content                                  | filename                                            |
+==========================================+=====================================================+
| Bed dip dd data with z and formation     | \*/output/orientations.csv or orientations_clean.csv|
+------------------------------------------+-----------------------------------------------------+
| Bed dip dd data with calculated polarity | \*/output/orientations_polarity.csv                 |
+------------------------------------------+-----------------------------------------------------+
| Extra orientations for empty series      | \*/output/empty_series_orientations.csv             |
+------------------------------------------+-----------------------------------------------------+
| Fault orientation with z                 | \*/output/fault_orientations.csv                    |
+------------------------------------------+-----------------------------------------------------+
| Clipped orientations shapefile           | \*/tmp/structure_clip.shp                           | 
+------------------------------------------+-----------------------------------------------------+
| Interpolated dip dip direction grid      | \*/tmp/interpolated_orientations.csv                | 
+------------------------------------------+-----------------------------------------------------+
| Interpolated contact vector grid         | \*/tmp/interpolated_contacts.csv                    |
+------------------------------------------+-----------------------------------------------------+
| Combined interpolation grid              | \*/tmp/interpolated_combined.csv                    | 
+------------------------------------------+-----------------------------------------------------+
| Pluton contact orientations              | \*/output /ign_orientations\*.csv                   | 
+------------------------------------------+-----------------------------------------------------+
| Near-Fold Axial Trace strat orientations | \*/output/fold_axial_trace_orientations2\.csv       |
+------------------------------------------+-----------------------------------------------------+
| Estimated contact orientations           | \*/output/contact_orientations\.csv                 |
+------------------------------------------+-----------------------------------------------------+

loop2model:

+----------------------------------+--------------------------------------------------+
| content                          | filename                                         | 
+==================================+==================================================+
| Gempy                            | Notebook creates 3D model itself                 | 
+----------------------------------+--------------------------------------------------+
| Basic vtk model thanks to gempy  | \*/vtk/\*.vtp                                    | 
+----------------------------------+--------------------------------------------------+
| LoopStructural                   | Notebook creates 3D model itself                 | 
+----------------------------------+--------------------------------------------------+
| noddy                            | Notebook creates 3D model, only of faults itself | 
+----------------------------------+--------------------------------------------------+